Oklahoma State University

Microarray Core Facility &

BioinfOSU

Publications

The following articles reporting research in which OMCF and/or BioinfOSU participated in some way were listed in PubMed in 2003-2005 or were published in non Pub-Med journals in 2003-2005 (reverse chronological order):

Ayalew, S., Blackwood, E.R. and Confer, A.W. (2005). Sequence diversity of the immunogenic outer membrane lipoprotein PlpE from Mannheimia haemolytica serotypes 1, 2, and 6. Vet Microbiol

de la Fuente, J., Ayoubi, P., Blouin, E.F., Almazan, C., Naranjo, V. and Kocan, K.M. (2005). Gene expression profiling of human promyelocytic cells in response to infection with Anaplasma phagocytophilum. Cell Microbiol 7: 549-59.

Donnelly, B.E., Madden, R.D., Ayoubi, P., Porter, D.R. and Dillwith, J.W. (2005). The wheat (Triticum aestivum L.) leaf proteome. Proteomics 5: 1624-33.

Joshi, B.D., Berg, M., Rogers, J., Fletcher, J. and Melcher, U. (2005). Sequence comparisons of plasmids pBJS-O of Spiroplasma citri and pSKU146 of S. kunkelii: implications for plasmid evolution. BMC Genomics 6: 175.

Park, S.J., Huang, Y. and Ayoubi, P. (2005). Identification of expression profiles of sorghum genes in response to greenbug phloem-feeding using cDNA subtraction and microarray analysis. Planta 1-16.

Poly, F., Threadgill, D. and Stintzi, A. (2005). Genomic diversity in Campylobacter jejuni: identification of C. jejuni 81-176-specific genes. J Clin Microbiol 43: 2330-8.

Ross, J.W., Smith, T.K., Krehbiel, C.R., Malayer, J.R., DeSilva, U., Morgan, J.B., White, F.J., Hersom, M.J., Horn, G.W. and Geisert, R.D. (2005). Effects of grazing program and subsequent finishing on gene expression in different adipose tissue depots in beef steers. J Anim Sci 83: 1914-23.

Stintzi, A., Marlow, D., Palyada, K., Naikare, H., Panciera, R., Whitworth, L. and Clarke, C. (2005). Use of genome-wide expression profiling and mutagenesis to study the intestinal lifestyle of Campylobacter jejuni. Infect Immun 73: 1797-810.

Te, J., Melcher, U., Howard, A. and Verchot-Lubicz, J. (2005). Soilborne wheat mosaic virus (SBWMV) 19K protein belongs to a class of cysteine rich proteins that suppress RNA silencing. Virol J 2: 18.

Uppalapati, S.R., Ayoubi, P., Weng, H., Palmer, D.A., Mitchell, R.E., Jones, W. and Bender, C.L. (2005). The phytotoxin coronatine and methyl jasmonate impact multiple phytohormone pathways in tomato. Plant J 42: 201-17.

Wang, Y., Zou, Z. and Jiang, H. (2005). An expansion of the dual clip-domain serine proteinase family in Manduca sexta: Gene organization, expression, and evolution of prophenoloxidase-activating proteinase-2, hemolymph proteinase 12, and other related proteinases. Genomics

Wren, J.D., Hildebrand, W.H., Chandrasekaran, S. and Melcher, U. (2005). Markov model recognition and classification of DNA/protein sequences within large text databases. Bioinformatics 21: 4046-53.

Zhang, Q., Melcher, U., Zhou, L., Najar, F.Z., Roe, B.A. and Fletcher, J. (2005). Genomic comparison of plant pathogenic and nonpathogenic Serratia marcescens strains by suppressive subtractive hybridization. Appl Environ Microbiol 71: 7716-23.

Zou, Z. and Jiang, H. (2005). Gene structure and expression profile of Manduca sexta prophenoloxidase-activating proteinase-3 (PAP-3), an immune protein containing two clip domains. Insect Mol Biol 14: 433-42.

Madden, R.D., Sauer, J.R. and Dillwith, J.W. (2004). A proteomics approach to characterizing tick salivary secretions. Exp Appl Acarol 32: 77-87.

Onodera, K. and Melcher, U. (2004). Selection for 3' end triplets for polymerase chain reaction primers. Mol Cell Probes 18: 369-72.

Palyada, K., Threadgill, D. and Stintzi, A. (2004). Iron acquisition and regulation in Campylobacter jejuni. J Bacteriol 186: 4714-29.

Poly, F., Threadgill, D. and Stintzi, A. (2004). Identification of Campylobacter jejuni ATCC 43431-specific genes by whole microbial genome comparisons. J Bacteriol 186: 4781-95.

Ray, A., Macwana, S., Ayoubi, P., Hall, L.T., Prade, R. and Mort, A.J. (2004). Negative subtraction hybridization: an efficient method to isolate large numbers of condition-specific cDNAs. BMC Genomics 5: 22.

Tzafrir, I., Pena-Muralla, R., Dickerman, A., Berg, M., Rogers, R., Hutchens, S., Sweeney, T.C., McElver, J., Aux, G., Patton, D. and Meinke, D. (2004). Identification of genes required for embryo development in Arabidopsis. Plant Physiol 135: 1206-20.

Wang, H.L., Postier, B.L. and Burnap, R.L. (2004). Alterations in global patterns of gene expression in Synechocystis sp. PCC 6803 in response to inorganic carbon limitation and the inactivation of ndhR, a LysR family regulator. J Biol Chem 279: 5739-51.

Rascoe, J.E., Berg, M., Melcher, U., Mitchell, F.L., Bruton, B.D. , Pair, S.D. & Fletcher, J. (2003), Identification, phylogenetic analysis and biological characterization of strains of Serratia marcescens causing cucurbit yellow vine disease., Phytopathology 93(10): 1233-1239.

Zhang, Q., Weyant, R., Melcher, U., Bruton, B. D., Pair, S. D., Mitchell, F., & J. Fletcher (2003), Genotyping of Serratia marcescens strains associated with cucurbit yellow vine disease., Phytopathology 93 (10): 1240-1246.

Bruton, B. D., Mitchell, F., Fletcher, J., Pair, S.D., Wayadande, A., Melcher, U., Brady, J., Bextine, B. & Popham, T. H. (2003), Serratia marcescens, a phloem-colonizing, squash bug-transmitted bacterium: causal agent of cucurbit yellow vine disease., Plant Disease 87: 937-944.

Melcher, U (2003), Turnip vein-clearing virus, from pathogen to host expression profile. Molec. Plant Pathol. 4: 133-140.

An, H., Melcher, U., Doss, P., Payton, M., Guenzi, A. C. & Verchot-Lubicz, J. (2003). Evidence that the 37 kDa protein of Soil-borne wheat mosaic virus is a virus movement protein. J Gen Virol 84: 3153-63.

Geisert, R. D., Ashworth, M. D. & Malayer, J. R. (2003). Expression of inter-alpha-trypsin inhibitor heavy chains in endometrium of cyclic and pregnant gilts. Reproduction 126: 621-7.

Wang, H. L., Postier, B. L. & Burnap, R. L. (2003). Alterations in global patterns of gene expression in Synechocystis sp. PCC 6803 in response to inorganic carbon limitation and the inactivation of ndhR, a LysR family regulator. J Biol Chem

Sengupta, S., Onodera, K., Lai, A. & Melcher, U. (2003). Molecular detection and identification of influenza viruses by oligonucleotide microarray hybridization. J Clin Microbiol 41: 4542-50.

Gou, D., Jin, N. & Liu, L. (2003). Gene silencing in mammalian cells by PCR-based short hairpin RNA. FEBS Lett 548: 113-8.

Aljamali, M. N., Bior, A. D., Sauer, J. R. & Essenberg, R. C. (2003). RNA interference in ticks: a study using histamine binding protein dsRNA in the female tick Amblyomma americanum. Insect Mol Biol 12: 299-305.

Postier, B. L., Wang, H. L., Singh, A., Impson, L., Andrews, H. L., Klahn, J., Li, H., Risinger, G., Pesta, D., Deyholos, M., Galbraith, D. W., Sherman, L. A. & Burnap, R. L. (2003). The construction and use of bacterial DNA microarrays based on an optimized two-stage PCR strategy. BMC Genomics 4: 23.

Stintzi, A. (2003). Gene expression profile of Campylobacter jejuni in response to growth temperature variation. J Bacteriol 185: 2009-16.

Ross, J., Jiang, H., Kanost, M. R. & Wang, Y. (2003). Serine proteases and their homologs in the Drosophila melanogaster genome: an initial analysis of sequence conservation and phylogenetic relationships. Gene 304: 117-31.

Tzafrir, I., Dickerman, A., Brazhnik, O., Nguyen, Q., McElver, J., Frye, C., Patton, D. & Meinke, D. (2003). The Arabidopsis SeedGenes Project. Nucleic Acids Res 31: 90-3.

Ross, J. W., Ashworth, M. D., Hurst, A. G., Malayer, J. R. & Geisert, R. D. (2003). Analysis and characterization of differential gene expression during rapid trophoblastic elongation in the pig using suppression subtractive hybridization. Reprod Biol Endocrinol 1: 23.


E-mail inquiries or additions to U. Melcher------------Last Updated: January, 2006 by Ulrich Melcher